Continuing professional development


Training Date & Institution (Organizer) Trainee(s) Certificate/program
CoLoMoTo Workshop (logical modelling) 17-19 July, 2017
Institut de biologie de l´ENS (IBENS),
Paris, France
The list of speakers is available here PDF
The Artificial Intelligence Workshop at the French Academy of Sciences October 2016
The Academy of Sciences.
Paris, France
The list of trainees is available here PDF
Training on IBM Watson solutions for life-sciences September 2016
Genopole Campus.
Evry, France
The list of trainees is available here PDF
Summer University at Pasteur Institute for entrepreneurship in life-science. July 2016
Institut Pasteur and Medicen Paris Region
Paris, France
The list of trainees is available here PDF
Data Science Tech Institute (DSTI) Courses. June 2016
DSTI Campus,
Paris, France
Prof Fabien Gandon (INRIA-CNRS) PDF
Training on OpenStack technology and Cloud Computing. May 2015
Cloudwatt
Boulogne Billancourt, France
Cloudwatt and Objectif Libre teams PDF
Workshop Big Data and Data Science. 23 May 2016
DSTI Campus,
Paris, France
Dr Gregory Piatetsky-Shapiro (KDnuggets) PDF
Training on 3DEXPERIENCE platform and related software as part of my participation to the BioIntelligence workshop. April 2015
Dassault Systèmes
Vélizy - France.
3DEXPERIENCE IT Department PDF
Genetics of gene expression in humans: data structures, algorithms, and inference July 2011
International Society for Computational Biology Tutorials
Vienna, Austria
Prof Vincent J. Carey
(Harvard Medical School, Boston, USA)
PDF
Modern statistical and sparse coding methods for genetic association study: structured genome-transcriptome-phenome association analysis July 2011
International Society for Computational Biology Tutorials
Vienna, Austria
Profs Eric P. Xing and Seyoung Kim (Carnegie Mellon University, Pittsburgh, USA) PDF
HiTSEQ 2011: High Throughput Sequencing: Algorithms & Methodologies July 2011
International Society for Computational Biology Tutorials
Vienna, Austria
The list of trainees is available here PDF
Weighted network anaylsis: Applications in genomics and systems biology 27-28 June 2011
The Bonn-Aachen International Center for 
Information Technology (B-IT) (Prof Joerg Zimmermann)Bonn, Germany
Prof Steve Horvath
Department of Biostatistics of the University of California
PDF
Computational analysis of single and combinatorial gene perturbations 27th June - 2nd July, 2009
International Society for Computational Biology Tutorials
Stockholm, Sweden
Dr Chad L. Meyers(University of Minnesota)& Dr Florian Markowetz(Cancer UK Cambridge Research Institute) PDF
From protein-protein interactions to networks and pathways 27th June - 2nd July, 2009
International Society for Computational Biology Tutorials
Stockholm, Sweden
Dr Javier De Las Rivas(Bioinformatics and Functional Genomics Research Group, Salamanca,Spain) PDF
Marie Curie grant writing training 26 May 2011
University of Lübeck, Institute for Signal processing
Lübeck, Germany
Ms Hanna Pletziger (Alexander von Humboldt Foundation) ---
Methematical modeling of infection disease in epidemiology Januray 2008
University Paris VI (Prof Alain-Jacques valleron)
Paris, France
Prof Alain-Jaques Valleron (INSERM U707) ---
European Bioinformatics Institute (EBI) Tutorials March 17-19th, 2008
The Consortium for Post-Genome Science.
Manchester, UK
Dr Wolfgang Huber (EBI, Hinxton, UK) Link
PhD courses of Statistical Anaylsis of Microarary Expression data with R and Bioconductor (ECTS credits:5) November 5-9th, 2007
Department of Mathematical Sciences
University of Copenhagen (Prof Niels Richard Hansen)
Copenhagen, Danemark
- Prof Gordon Smyth(Walter and Eliza Hall Institute of Medical Research, Australia)
- Dr Wolfgang Huber (EBI, UK)
- Prof Vincent Carey (Harvard Medical School, Boston, USA)
- Dr Denise Scholtens (Northwestern University, Chicago, USA)
- Dr Steffen Durinck (Lawrence Berkeley National Laboratory, USA)
PDF
Workshop on Molecular and Statistical Genomic Epidemiology May, 13-16, 2007
Le Centre National de Genotypage (Profs Ivo G. Gut, Mark Lathrop, and Dan Weeks)
Maison de la Chimie
Paris, France
The list of trainees & speakers is available here PDF
Advanced courses: Principles and methods for genomics analysis November 17th-December 15th, 2006
Pasteur Institute Paris (Dr Isabelle Saint Girons)
Paris, France
The list of trainees is available here PDF
Business and management practices Institute of doctoral schools of Paris VI & Partners United
Paris, France
Ms Anne Cherret & Mr Abdellah Ben Mlih (Partners United) PDF
Machine learning and data mining April 27-28th, 2006
University Paris 13 - Institut Galiliee
Paris, France
The list of trainees is available here PDF
Methods for detection of alternative splicing from exon array data July 18th, 2006
Institut Curie (Prof Emmanuel Barillot)
Paris, France
Prof Terry Speed (Department of statistics and program in Biostatistics, University of California) PDF
ChIP-chip and high density tiling arrays: issues in design and analysis July 18th, 2006
Institut Curie (Prof Emmanuel Barillot)
Paris, France
Prof Terry Speed (Department of statistics and program in Biostatistics, University of California) PDF
Workshop LIX - Genomics December 12-14th, 2005
Ecole polytechnique Palaiseau - Laboratory LIX
Paris, France
The list of trainees is available here PDF
Training in Computer Sciences Nov-Dec 1995
The Algerian Services & Technologies of Networks (ALSTON), Batna - Algeria
--- PDF

Education

University / Research institution Education / trainings Skills developed Acknowledgments
Postdoctoral Fellowship
July 1st 2010 - December 31th 2011
University of Luebeck
Department of Medicine Clinik II (Cardiology), Luebeck, Germany,
Postdoctoral supervisor: Prof H. Schunkert
- Genetics of myocardial infarction
- Preprocessing and analysis of miRNAs data
- System genetics
- Paper writing skills
- Cardiology
- Management of collaborative projects
- Grants writing
- German language skills
- Prof. H. Schunkert
- Mrs R. Domeier
- My professors of German language

PhD candidate in Public Health, Epidemiology and Biomedical Information Sciences, Option : Bioinformatics
November 1st 2005 - June 30th 2010
Doctoral School Pierre Louis of Public Health, Epidemiology and Biomedical Information - ED 393.
(Profs A. J. Valeron and D. Costagliola)
University Pierre and  Marie Curie (Paris VI)
The French Institute of Health and Medical Research (INSERM)
Thesis title: Bioinformatics approaches for analyzing genomics and microarray data in cardiovascular research.
Paris, France,
PhD director: Dr F. Cambien
PhD mentor: Prof D. Costagliola
- Human genetics
- Molecular biology
- Genetics of cardiovascular disease
- Genetics of atherosclerosis
- Microarray gene expression
- Genome-wide association studies (GWAS)
- Bioinformatics and computational biology
- Manuscripts writing
- Management of large scale genomics projects
- Prof A.J. Valleron
- Prof D. Costagliola
- Dr F. Cambien
- Mme E. Guilloux
- My colleagues, my collaborators, and Cardiogenics partners.
- La Fondation pour la Recherche Medicale (FRM)
- INSERM
- Cardiogenics Consortium
Masters of Research in History of Sciences and Techniques
2008 - 2009
University Paris 1 - Pantheon-Sorbonne
Dissertation title: History of reverse engineering in biology: a new approach of systems biology or a new interface between engineering and life sciences?
Supervisors: Prof. B. Belhoste (University Paris 1 - Pantheon-Sorbonne, Paris, France) & Prof. E. Fox Keller (Massachusetts Institute of Technology, USA)
- History of sciences
- History of biology and genetics
- Reverse engineering
- Systems biology
- Prof Bruno Belhoste


University Diploma (DU) of Bioengineering, Valorization of Applied Research and Biomedical Innovation
2004-2005
University Pierre and Marie Curie (Paris VI),
Paris, France
Dissertation title: Protection of persons in biomedical research: risks related to the introduction of new communication technologies such as wireless and mobile communication.
Supervisor: Prof. A. Sezeur
Dissertation defended in 2005
- Valorization of Research
- Patent protection and innovation
- Business intelligence
- University-industry partnerships
- Public funding for R&D, development capital fund
- Legal framework for research
- Ethics and regulation of clinical research
- Pharmaceutical industry
- Intellectual property
- Creation of high-tech companies
- Prof. A. Sezeur
- All my professors



Research training in medical informatics
2003-2004
European Hospital Georges Pompidou
Department of medical informatics (Prof P. Degoulet) and department of radiology (Prof G. Frija)

CIRA, a High-Tech Company for image compression and technology of networks (Prof Hochberg S.)
- Compression of medical images
- Image J environment
- Wavelet theory
- Signal processing
- Telemedicine and teleradiology
- Medicine: cerebrovascular accident (CVA), radiology
- My supervisors, Dr D. Heudes and Mr S. Topin

Masters of research in medical informatics and communication technologies
2002-2004
University Pierre and Marie Curie (Paris VI), Paris, France
SPIM laboratory (Laboratoire de Sante Publique et Informatique Medicale; laboratory of public health and medical informatics)
Dissertation title: Quantitative and visual assessment of a medical image compression algorithm based on wavelet transformation. Elaboration of optimized compression approach. Supervisors: Dr D. Heudes (European Hospital George Pompidou and SPIM laboratory) & Mr S. Topin (high technology CIRA company)
Masters thesis defended in 2004
- Medical informatics
- Bioinformatics
- Data mining
- Networking and communication technologies in healthcare environments
- Health information systems
- Processing of medical images
- Numerical simulation
- Standards for medical data management
- Medical ontologies and knowledge modeling
- Decision support systems
- My professors
Training for engineering final year project
2000-2001
University hospital Ibn Badis of Constantine
Laboratory of audit and quality of healthcare (Prof M. Ouchtati)
Supervisors: Prof Ouchtati M and Dr Boussouf M
- Healthcare information systems
- Sharing of medical records
- Intranet and networks
- Web development and administration
- Deployment of Intranets
- Shared medical record
- My professors
Engineering studies of computer science
Graduated in 2001 (with honors and ranked first)
Faculty of Engineering Sciences
University Mentouri of Constantine
Constantine, Algeria
Dissertation title: Integrating new information and communication technologies in healthcare. Deployment of an intranet and shared medical record in the University Hospital of Constantine.
Supervisors: Prof Ouchtati M. (University Hospital of Constantine) & Dr Boussouf M. (Faculty of Engineering Sciences Constantine)
Dissertation defended in 2001
- Computer architecture
- Probability and statistics
- Mathematics
- Advanced operating systems
- Graph theory
- Networking and communication technologies
- Data analysis
- Compilation
- Automatic and servo control system
- Advanced Database Systems
- Programming language theory (PLT)
- Artificial intelligence
- Signal processing
- English for computer science and networking
- My professors
- My supervisors: Prof M. Ouchtati and Dr M. Boussouf
Training for final year graduation project
1995-1996
NAFTAL (the principal company of petroleum-based fuels in Algeria), Batna, Algeria
- Enterprise information system
- Development of databases and software
- Development of commercial software Visual object-oriented procedural programming language.
- Management
- My supervisor Dr Zidat Samir
Applied studies in computer sciences
Graduated in 1997 with the mention "very good"
Faculty of Engineering Sciences
University of Batna, Algeria
Dissertation title "Conception and development of commercial management software".
Supervisor: Dr S. Zidat
- Mathematics
- Electronics and microprocessor architecture
- Low-level programming language (Assembly language)
- Algorithmic and high-level programming language
- File systems and databases
- Software engineering
- Operating systems
- Operational research
- Economy and management
- Applied statistics
- Technical English
- Algerian Ministry of education
- My parents
Baccalaureat (high school diploma; "Abitur" in German) of life-Sciences, 1993
Lycee Elbeh-Lakhdar Khencheka
Khencheka, Algeria.

(Important : Due to the political crisis in Algeria at this period, some of my professors were arrested because of their political ideologies, only me and two other colleagues have obtained this diploma on the whole class).

- Mathematics
- Physics
- Chemistry
- Life-sciences
- Philosophy
- English
- French
- Arabic
- History and Geography
- My teachers
- My parents