Research & Computing Skills

  • Bioinformatics & Biostatistics
    • Bioinformatics Environments: R, Bioconductor, and Matlab.
    • Statistical & Mathematical Environments: Matlab, R, Matematica, and Scilab.
    • Exome and Whole-Genome sequencing data analysis
    • Microarray and RNA-Seq gene expression analysis: Preprocessing and analysis of gene expression from different technologies (Affymetrix,Illumina, Agilent, RNG-MRC two colour arrays). R packages for RNA-Seq data analysis
    • Micro RNA (miRNAs) data analysis: Pre-processing and analysis of Agilent miRNAs data, joint analysis of miRNAs and mRNAs.
    • Genome-wide association studies (GWAS): Preprocessing and analysis of Affymetrix and Illumina GWAS data (PLINK, R packages for GWAS analysis, visualization and annotation of SNP data).
    • Systems Genetics: Network gene co-expression analysis (method: WGCNA).
    • Methods: Gene-Set Enrichment Analysis (GSEA), SNP-Set Enrichment Analysis (SSEA), Pathway-based approaches.
    • Life-Science Database and Standards for high-throughput genomics data: Life-sciences databases, Microarray databases, next-generation sequencing databases, and standards. Extensive experience with database design and development.
    • Software: Dchip, Genomatix, BRB ArrayTools, Partek Genomics Suite, Ingenuity System, TIGR software, Affymetrix software and tools, Illumina software.

  • eHealth and Digital Technologies
  • Big Data & Open Data
  • Cloud Computing
    • Amazon web services (Amazon Elastic Compute Cloud (EC2, ROnCloud, EBI R Cloud Workbench).
    • Cloudwatt and Open Stack.
  • Analysis of social media
  • Blockchain in health
  • Mobile app development

  • Biology, Genetics, and Epidemiology
    • Biology: Molecular Biology, biology of human monocytes and macrophages, molecular mechanisms of atherosclerosis and myocardial infarction.
    • Genetics: Human genetics, basics in mouse genetics.
    • Epidemiology: Epidemiology and mathematical modeling of infectiouse diseases.
    • History of Genetics : My Web page dedicated to history of genetics.

  • Medicine
    • Cardiology: Atherosclerotic diseases
    • Radiology: Medical imaging
    • Healthcare management: hospitals information systems and management of clinical data.

  • Medical Informatics
  • Medical ontologies, management of medical data, information systems in healthcare, healthcare standards (HL7, DICOM, IHE).

    Medical imaging: Processing and analysis of medical imaging, compression of medical images.
    Tools and environments: Image J, Matlab, Wavelet compression, R packages of image processing.

  • Informatics, Electronics, and Telecommunication
  • Advanced operating systems, software engineering, distributed systems, databases, Artificial Intelligence, OSI and TCP/IP protocols, ATM networks, mobile communications (UMTS GPRS, GSM), Wireless-networks, Ethernet networks, Intranet, Mobile IP, networks security, microprocessor architecture and electronic circuits.

  • Data Mining & machine learning
  • Clementine, Weka, and R packages for machine learning

  • Text Mining and BioNLP
  • Natural Language Processing in Biomedicine (BioNLP)

  • Modeling and project management
  • Modeling and project management: UML modeling, Merise, MCP, PERT, and GANTT.

  • Programming Languages
  • C, C++, R, Smalltalk, Java, J++, ADA, Visual Cafe, Visual Basic, Visual Fox Pro, Pascal, Fortran, Delphi, Ruby, Python, Perl, PLSQL, Java Script, ASP, PHP, VB script, HTML, XHTML, and XML.

  • Web development skills
  • Website developement,Wordpress

  • Web (HTTP) server and web development
  • Apache HTTP Server, Tomcat, and Microsoft Internet Information Services (IIS) Server

Other Skills

  • Management of pluridisciplinary projects
  • I have managed multidisciplinary genomics projects, including transcriptomics projects and the large-scale genetics of gene expression Cardiogenics project.

  • Entrepreneurship, company creation and management skills
  • Proposal / grant writing skills
  • I have written and submitted the following proposals: EMIGWAS: submitted for the joint call between the German Federal Ministry of Education and Research (BMBF) and the Science and Technology Development Fund of Egypt (STDF) AMIGWAS: submitted to the National Agency for the Development of Research. Ministry of Higher Education and Scientific Research of Algeria (PNR health 2010).IPA´SSB 2012: Proposal for an annual international summer school of bioinformatics in Algiers.

  • Patent writing
  • I have been trained on patents search, writing, and submission.

  • Event sponsorship writing skills